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  5. Solyc01g099760.3.1

Solyc01g099760.3.1 (RPT5A, ATS6A.2, Solyc01g099760)


Aliases : RPT5A, ATS6A.2, Solyc01g099760

Description : regulatory component RPT5 of 26S proteasome


Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g099760.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G09100 RPT5B 26S proteasome AAA-ATPase subunit RPT5B 0.03 OrthoFinder output from all 47 species
AT3G05530 RPT5A, ATS6A.2 regulatory particle triple-A ATPase 5A 0.05 OrthoFinder output from all 47 species
Adi_g008732 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.14G077800.1 RPT5A, ATS6A.2,... regulatory component *(RPT5) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001187.20 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Oryza... 0.03 OrthoFinder output from all 47 species
Cre10.g439150 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Dac_g16496 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dcu_g01308 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Gb_01340 RPT5A, ATS6A.2 regulatory component RPT5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Gb_25628 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Brassica... 0.04 OrthoFinder output from all 47 species
Gb_25630 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Solanum... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56000.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.07 OrthoFinder output from all 47 species
LOC_Os06g07630.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Lfl_g01430 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Mp3g09490.1 RPT5A, ATS6A.2 regulatory component RPT5 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Nbi_g10547 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Ore_g13206 RPT5A, ATS6A.2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c5_21920V3.1 RPT5A, ATS6A.2,... regulatory particle triple-A ATPase 5A 0.02 OrthoFinder output from all 47 species
Spa_g12836 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e016153_P002 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e031055_P001 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 362 406
IPR003959 ATPase_AAA_core 207 339
IPR032501 Prot_ATP_ID_OB_C 73 149
No external refs found!