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  5. Solyc01g073950.4.1

Solyc01g073950.4.1 (Solyc01g073950)


Aliases : Solyc01g073950

Description : transcription factor (MYB-related)


Gene families : OG0003364 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g073950.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Mp5g13320.1 No alias transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Ore_g17316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09798 BRD4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035270_P001 BRD4, Zm00001e035270 transcription factor (MYB-related) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043486 obsolete histone exchange IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 328 407
IPR001005 SANT/Myb 28 77
No external refs found!