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  5. Solyc01g050040.4.1

Solyc01g050040.4.1 (ATCRT1, Solyc01g050040)


Aliases : ATCRT1, Solyc01g050040

Description : E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica (sp|q6avn2|sirp1_orysj : 175.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g050040.4.1

Target Alias Description ECC score Gene Family Method Actions
Als_g47639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019972001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
Gb_26865 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g30265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30731 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g05550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038199_P001 RHC1A, Zm00001e038199 Probable E3 ubiquitin-protein ligase RHC1A... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 89 131
No external refs found!