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  5. Solyc01g010570.4.1

Solyc01g010570.4.1 (Solyc01g010570)


Aliases : Solyc01g010570

Description : no hits & (original description: none)


Gene families : OG0002724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g010570.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT2G02880 No alias mucin-related 0.03 OrthoFinder output from all 47 species
Adi_g058911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0501.g073884 No alias not classified & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Cba_g05116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G068000.1 Ceric.30G068000 not classified & original description: pacid=50609099... 0.02 OrthoFinder output from all 47 species
Dcu_g14111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038094001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g23176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_8367012g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g16966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!