Solyc01g009290.4.1 (CLPS3, Solyc01g009290)

Aliases : CLPS3, Solyc01g009290

Description : component Clp1 of Cleavage Factor II (CF-IIm) complex

Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g009290.4.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g040962	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Adi_g063486	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Aob_g05110	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.04	OrthoFinder output from all 47 species
Cba_g12558	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.05	OrthoFinder output from all 47 species
Ceric.38G063700.1	CLPS3, Ceric.38G063700	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species
Dde_g25534	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species
Ehy_g17586	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species
Lfl_g10185	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Msp_g12143	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010655	Clp1_C	327	438
IPR032324	Clp1_N	24	115
IPR032319	CLP1_P	134	322

External Links

No external refs found!