Solyc01g007150.3.1 (Solyc01g007150)

Aliases : Solyc01g007150

Description : subunit beta of cargo adaptor F-subcomplex

Gene families : OG0002649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g007150.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00238440	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.09	OrthoFinder output from all 47 species
AT4G31480	No alias	Coatomer, beta subunit	0.15	OrthoFinder output from all 47 species
AT4G31490	No alias	Coatomer, beta subunit	0.13	OrthoFinder output from all 47 species
Adi_g059781	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Adi_g109510	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Aev_g08571	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Ala_g12957	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Als_g16565	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Als_g31327	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05342	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Aop_g08029	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0279.g062259	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.08	OrthoFinder output from all 47 species
Cba_g01302	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Ceric.04G093900.1	Ceric.04G093900	subunit beta of cargo adaptor F-subcomplex & original...	0.08	OrthoFinder output from all 47 species
Ceric.24G063400.1	Ceric.24G063400	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.156	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Cre04.g217921	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	OrthoFinder output from all 47 species
Dac_g02895	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Dcu_g03132	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Dde_g09656	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01035511001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.14	OrthoFinder output from all 47 species
Gb_03760	No alias	subunit beta of cargo adaptor F-subcomplex	0.12	OrthoFinder output from all 47 species
Gb_23100	No alias	subunit beta of cargo adaptor F-subcomplex	0.12	OrthoFinder output from all 47 species
LOC_Os01g17430.1	LOC_Os01g17430	subunit beta of cargo adaptor F-subcomplex	0.05	OrthoFinder output from all 47 species
LOC_Os11g07280.1	LOC_Os11g07280	subunit beta of cargo adaptor F-subcomplex	0.12	OrthoFinder output from all 47 species
Len_g12104	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.09	OrthoFinder output from all 47 species
Lfl_g04220	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
MA_10431517g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.04	OrthoFinder output from all 47 species
MA_10432097g0010	No alias	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_10432097g0020	No alias	subunit beta of cargo adaptor F-subcomplex	0.04	OrthoFinder output from all 47 species
MA_230138g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.06	OrthoFinder output from all 47 species
MA_704359g0010	No alias	Coatomer subunit beta-1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp5g08450.1	No alias	subunit beta of cargo adaptor F-subcomplex	0.14	OrthoFinder output from all 47 species
Msp_g15814	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Nbi_g02428	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Ore_g05742	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Ore_g17455	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g17465	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30253	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Ore_g42071	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g02305	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Ppi_g17439	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Sam_g19453	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Smo160340	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Spa_g12851	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Spa_g56532	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Tin_g04740	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e009041_P001	Zm00001e009041	subunit beta of cargo adaptor F-subcomplex	0.07	OrthoFinder output from all 47 species
Zm00001e017416_P001	Zm00001e017416	subunit beta of cargo adaptor F-subcomplex	0.13	OrthoFinder output from all 47 species
Zm00001e025465_P001	Zm00001e025465	subunit beta of cargo adaptor F-subcomplex	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	HCCA
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	HCCA
MF	GO:0004576	oligosaccharyl transferase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0019107	myristoyltransferase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011710	Coatomer_bsu_C	670	808
IPR029446	COPB1_appendage_platform_dom	814	941
IPR002553	Clathrin/coatomer_adapt-like_N	20	466

External Links

No external refs found!

Solyc01g007150.3.1 (Solyc01g007150)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation