Aliases : Solyc01g006970
Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana (sp|f4ilr7|dexh1_arath : 1443.0)
Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G58060 | No alias | RNA helicase family protein | 0.06 | OrthoFinder output from all 47 species | |
AT2G01130 | No alias | DEA(D/H)-box RNA helicase family protein | 0.04 | OrthoFinder output from all 47 species | |
AT5G04895 | No alias | DEA(D/H)-box RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g021909 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g057149 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g083402 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g105502 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g01587 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g10895 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0037.g025865 | No alias | not classified & original description: CDS=97-4182 | 0.04 | OrthoFinder output from all 47 species | |
Cba_g21782 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g33749 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.06G015600.1 | Ceric.06G015600 | not classified & original description: pacid=50620151... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.20G077000.1 | Ceric.20G077000 | not classified & original description: pacid=50565979... | 0.08 | OrthoFinder output from all 47 species | |
Ceric.23G070100.1 | Ceric.23G070100 | not classified & original description: pacid=50609964... | 0.09 | OrthoFinder output from all 47 species | |
Cre03.g171650 | No alias | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cre06.g266416 | No alias | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g22791 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g16672 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g19268 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g07134 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01023271001 | No alias | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... | 0.04 | OrthoFinder output from all 47 species | |
Gb_05411 | No alias | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os01g02884.1 | LOC_Os01g02884 | DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g53760.1 | LOC_Os03g53760 | DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os04g35260.1 | LOC_Os04g35260 | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os10g33275.1 | LOC_Os10g33275 | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Len_g47532 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g02413 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g04976 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_10429367g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
MA_177779g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Mp5g09990.1 | No alias | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g20169 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g43492 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g44903 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g10916 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g12240 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g20526 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g14536 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g15305 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g08954 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g14582 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Smo173775 | No alias | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Spa_g26916 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g47720 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Tin_g02164 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g02904 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e004608_P001 | Zm00001e004608 | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0007062 | sister chromatid cohesion | IEP | HCCA |
BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | HCCA |
BP | GO:0007275 | multicellular organism development | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022402 | cell cycle process | IEP | HCCA |
BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
BP | GO:0032502 | developmental process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048856 | anatomical structure development | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
MF | GO:0070566 | adenylyltransferase activity | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
No external refs found! |