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  5. Solyc00g500028.1.1

Solyc00g500028.1.1 (PETD, Solyc00g500028)


Aliases : PETD, Solyc00g500028

Description : Cytochrome b6-f complex subunit 4 OS=Nymphaea alba (sp|q6ew21|petd_nymal : 223.0)


Gene families : OG0008554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500028.1.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
ATCG00730 PETD photosynthetic electron transfer D 0.42 OrthoFinder output from all 47 species
Als_g01331 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.12 OrthoFinder output from all 47 species
Cba_g65705 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.09 OrthoFinder output from all 47 species
Ceric.05G041800.1 PETD, Ceric.05G041800 component *(PetD/IV) of cytochrome b6/f complex &... 0.13 OrthoFinder output from all 47 species
Ceric.05G044800.1 PETD, Ceric.05G044800 component *(PetD/IV) of cytochrome b6/f complex &... 0.27 OrthoFinder output from all 47 species
Ceric.1Z019600.1 PETD, Ceric.1Z019600 component *(PetD/IV) of cytochrome b6/f complex &... 0.16 OrthoFinder output from all 47 species
Ceric.1Z163300.1 PETD, Ceric.1Z163300 not classified & original description: pacid=50596945... 0.11 OrthoFinder output from all 47 species
Ceric.29G003800.1 PETD, Ceric.29G003800 component *(PetD/IV) of cytochrome b6/f complex &... 0.17 OrthoFinder output from all 47 species
Ceric.32G035100.1 PETD, Ceric.32G035100 component *(PetD/IV) of cytochrome b6/f complex &... 0.05 OrthoFinder output from all 47 species
Ceric.38G008500.1 PETD, Ceric.38G008500 component *(PetD/IV) of cytochrome b6/f complex &... 0.13 OrthoFinder output from all 47 species
Dcu_g47307 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.16 OrthoFinder output from all 47 species
Gb_03953 No alias component PetD/IV of cytochrome b6/f complex 0.06 OrthoFinder output from all 47 species
LOC_Os01g57945.1 PETD, LOC_Os01g57945 component PetD/IV of cytochrome b6/f complex 0.46 OrthoFinder output from all 47 species
LOC_Os04g16844.1 PETD, LOC_Os04g16844 component PetD/IV of cytochrome b6/f complex 0.46 OrthoFinder output from all 47 species
LOC_Os08g15292.1 PETD, LOC_Os08g15292 component PetD/IV of cytochrome b6/f complex 0.09 OrthoFinder output from all 47 species
LOC_Os10g21326.1 PETD, LOC_Os10g21326 component PetD/IV of cytochrome b6/f complex 0.46 OrthoFinder output from all 47 species
Mp1g00750.1 No alias Cytochrome b6-f complex subunit 4 OS=Pinus thunbergii... 0.09 OrthoFinder output from all 47 species
Ore_g03954 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.19 OrthoFinder output from all 47 species
Pir_g65515 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002259 PETD not classified & original description: CDS=1-288 0.13 OrthoFinder output from all 47 species
Sam_g10280 No alias component *(PetD/IV) of cytochrome b6/f complex &... 0.12 OrthoFinder output from all 47 species
Solyc01g017430.1.1 PETD, Solyc01g017430 Cytochrome b6-f complex subunit 4 OS=Nymphaea alba... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031361 obsolete integral component of thylakoid membrane IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0042301 phosphate ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005798 Cyt_b/b6_C 54 142
No external refs found!