Smo74992 (RPT5A, ATS6A.2)

Aliases : RPT5A, ATS6A.2

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT5 regulatory component

Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo74992
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AT3G05530	RPT5A, ATS6A.2	regulatory particle triple-A ATPase 5A	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g010505	RPT5B	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Ceric.14G077800.1	RPT5A, ATS6A.2,...	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001187.20	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Oryza...	0.02	OrthoFinder output from all 47 species
Cre10.g439150	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.04	OrthoFinder output from all 47 species
Dcu_g01308	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Gb_01340	RPT5A, ATS6A.2	regulatory component RPT5 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Gb_25630	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Solanum...	0.02	OrthoFinder output from all 47 species
LOC_Os02g56000.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species
LOC_Os06g07630.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.08	OrthoFinder output from all 47 species
Mp3g09490.1	RPT5A, ATS6A.2	regulatory component RPT5 of 26S proteasome	0.07	OrthoFinder output from all 47 species
Msp_g05078	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Tin_g01827	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Zm00001e016153_P002	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Zm00001e031055_P001	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004576	oligosaccharyl transferase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	204	336

External Links

No external refs found!

Smo74992 (RPT5A, ATS6A.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation