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  5. Smo73828

Smo73828


Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo73828
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Adi_g030762 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g23160 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16308 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01032591001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.05 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Ore_g40651 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27577 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Zm00001e019387_P001 Zm00001e019387 Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 23 70
No external refs found!