Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Smo73828 | |
Cluster | HCCA: Cluster_90 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g030762 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g23160 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g16308 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01032591001 | No alias | Pentatricopeptide repeat-containing protein At5g39980,... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os01g61630.1 | LOC_Os01g61630 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g40651 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g27577 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g087560.1.1 | Solyc02g087560 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e019387_P001 | Zm00001e019387 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 23 | 70 |
No external refs found! |