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  5. Smo444132

Smo444132 (NUA, AtTPR)


Aliases : NUA, AtTPR

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin


Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo444132
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00124730 NUA, AtTPR,... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
AT1G79280 NUA, AtTPR nuclear pore anchor 0.06 OrthoFinder output from all 47 species
Adi_g055513 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.05 OrthoFinder output from all 47 species
Aev_g02612 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Ala_g07174 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Als_g57232 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09061 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene14388.t1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene40431.t1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0150.g053279 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Ceric.23G046200.1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.46 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Dac_g14678 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03218 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Dde_g09517 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g15153 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01036698001 NUA, AtTPR Protein translocation.nucleus.nucleocytoplasmic... 0.1 OrthoFinder output from all 47 species
Gb_36757 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g50790.2 LOC_Os02g50790 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os02g50799.1 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Len_g13910 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g03520 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
MA_10287420g0010 NUA, AtTPR no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435343g0040 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
MA_109011g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
MA_33097g0010 NUA, AtTPR Nuclear-pore anchor OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_929786g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Mp2g14600.1 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Pir_g20507 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g44472 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Sam_g18065 No alias nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Solyc06g053570.2.1 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Spa_g10543 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.07 OrthoFinder output from all 47 species
Tin_g12694 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e023916_P004 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR012929 TPR/MLP1 1039 1165
No external refs found!