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  5. Smo229587

Smo229587


Description : Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar


Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo229587

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00187330 evm_27.TU.AmTr_v1... Prolycopene isomerase, chloroplastic OS=Daucus carota 0.02 OrthoFinder output from all 47 species
Aev_g49491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08553 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27219 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.23G052400.1 Ceric.23G052400 not classified & original description: pacid=50610225... 0.07 OrthoFinder output from all 47 species
Ceric.32G057300.1 Ceric.32G057300 not classified & original description: pacid=50597506... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001258.10 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.8 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre09.g407200 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.02 OrthoFinder output from all 47 species
Cre16.g674950 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.03 OrthoFinder output from all 47 species
Dac_g12181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10069 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g14193 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g06829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g62510.1 LOC_Os03g62510 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.06 OrthoFinder output from all 47 species
Lfl_g05426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428345g0020 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g48604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014061 No alias not classified & original description: CDS=115-1746 0.03 OrthoFinder output from all 47 species
Sam_g07020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc05g010180.4.1 Solyc05g010180 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.03 OrthoFinder output from all 47 species
Spa_g07332 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g10638 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g12165 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23774 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011669_P002 Zm00001e011669 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 34 530
No external refs found!