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  5. Smo182361

Smo182361


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP107 scaffold nucleoporin


Gene families : OG0005850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo182361

Target Alias Description ECC score Gene Family Method Actions
AT3G14120 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 OrthoFinder output from all 47 species
Adi_g058716 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0200.g057533 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.05 OrthoFinder output from all 47 species
Ceric.34G011000.1 Ceric.34G011000 not classified & original description: pacid=50624097... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001471.16 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre10.g425675 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g10818 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.05 OrthoFinder output from all 47 species
Dde_g24769 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Ehy_g28178 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
LOC_Os11g42420.1 LOC_Os11g42420 NUP107 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g21186 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.02 OrthoFinder output from all 47 species
Lfl_g09527 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.04 OrthoFinder output from all 47 species
MA_10437096g0010 No alias NUP107 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Zm00001e021094_P001 Zm00001e021094 NUP107 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007252 Nup84/Nup107 107 750
No external refs found!