1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo169856

Smo169856


Description : S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo169856

Target Alias Description ECC score Gene Family Method Actions
Ala_g35438 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g07945 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g04918 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G054200.1 Ceric.05G054200 tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.07 OrthoFinder output from all 47 species
Cre14.g623300 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.01 OrthoFinder output from all 47 species
Len_g09766 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g35032 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
MA_183671g0010 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.09 OrthoFinder output from all 47 species
Ore_g07642 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Spa_g06044 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013917 tRNA_wybutosine-synth 492 555
No external refs found!