Sequence Description Alias PCC hrr Smo442417 0.9534592646012073 4 Smo413327 0.9480127347447623 2 Smo173562 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.9381212842361992 23 Smo437689 Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica 0.937538602266901 12 Smo173767 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.9373333456328802 16 Smo446291 0.937216984290146 6 Smo410730 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.9348832216284609 9 Smo441667 RNA biosynthesis.transcriptional activation.CAMTA transcription factor CAMTA3, SR1 0.9341612104851289 8 Smo405878 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL3 lysine-specific demethylase LDL3 0.9324121923386651 29 Smo175495 ABC transporter F family member 3 OS=Arabidopsis thaliana GCN3, ATGCN3 0.9297345789095076 12 Smo444050 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80 0.9284589030030265 32 Smo60640 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor 0.9279258855265734 29 Smo439529 0.9266199780809394 21 Smo406615 0.9257950378349045 14 Smo139346 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii LRS1 0.9255047736009597 15 Smo411870 Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana CID4 0.92460045937346 16 Smo442419 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 1 NRPC1 0.9241110418085556 17 Smo112057 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase 0.9240118248567171 18 Smo185753 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.KA120 import karyopherin 0.9234871126122547 19 Smo75107 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.9211015564451889 32 Smo109207 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase TOP1BETA, TOP1 0.9206932561747285 21 Smo447947 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG2, ATXR3 0.920526503471805 29 Smo406046 0.9203204217250512 36 Smo443140 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana MOS1 0.9202665994326681 58 Smo440330 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC4 adherin 0.919848868098538 25 Smo177985 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor PKL, GYM, CHR6, SSL2, CHD3 0.9197119365868248 64 Smo444016 0.9194673169559191 27 Smo165037 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).CAND1 adaptor protein exchange factor HVE, TIP120, CAND1, ATCAND1, ETA2 0.9189301338114555 41 Smo419685 0.9181016016604487 29 Smo55167 Vesicle trafficking.endomembrane trafficking.PI3-kinase vesicle nucleation complex I/II.TRAF1 ATG6-stability regulator protein 0.9172052732408008 34 Smo156135 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763 0.9169688229048978 31 Smo53092 Protein modification.phosphorylation.CMGC kinase superfamily.SRPK kinase 0.9164339932330786 32 Smo411166 0.9162989032008172 33 Smo107792 0.9157640414194489 34 Smo75384 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica 0.9153736564207937 35 Smo419660 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component 0.9131790609950738 36 Smo164675 Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone GTB1 0.9129812363416008 53 Smo173599 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase ATCPL1, CPL1, FRY2 0.9123687867069565 38 Smo444132 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.9119923712740284 75 Smo443671 Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana 0.9118866325761099 40 Smo86139 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC3 component 0.911738070481028 52 Smo182327 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component 0.9116940306081852 69 Smo109541 Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana PRP39 0.9113419427065867 43 Smo445664 0.9102862786841398 44 Smo145521 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DDB1 core adaptor component DDB1A 0.9090919695450281 45 Smo168311 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate reductase 0.9090580733899807 46 Smo444379 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) 0.9088657325478441 47 Smo75592 0.9088383000987628 48 Smo113824 Protein modification.phosphorylation.CK kinase superfamily.CKL protein kinase ckl12 0.908714434350321 49 Smo438614 0.9085865556307854 50 Smo420183 RNA biosynthesis.transcriptional activation.Trihelix transcription factor 0.9085110406801584 51 Smo442211 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761 0.9081496988829575 52 Smo445658 Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana EMB2763 0.9072910517314644 72 Smo61333 0.9055390132894069 54 Smo438556 0.9053882342192382 55 Smo131582 Actin-related protein 5 OS=Arabidopsis thaliana ARP5, ATARP5 0.905031608998336 56 Smo64568 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.9049037899338279 80 Smo440240 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase 0.9038569851448538 58 Smo437976 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.9034466959285565 59 Smo416323 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP4 phosphatase complex.regulatory component (PSY2L) 0.9031659478350275 60 Smo449156 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component GTA02, GTA2 0.9030255439499022 61 Smo439148 0.9029821881777937 62 Smo175555 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase HUB2 0.9026084301911118 76 Smo110102 0.902425022191017 64 Smo439954 Cell cycle.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.MAD1 checkpoint protein 0.9023819695169729 65 Smo420594 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor ATALY3, ALY3 0.9022054640423549 70 Smo233936 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO1 export karyopherin XPO1A, HIT2, ATCRM1, XPO1, ATXPO1 0.9013515905488034 67 Smo79275 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2 0.9008256633340054 68 Smo74297 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM732 component 0.9005496005330332 69 Smo441095 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.ATRX chromatin remodeling factor CHR20, ATRX 0.9004560802308643 70 Smo424372 Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana 0.899964848192515 71 Smo30736 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase 0.8995508212836237 72 Smo437710 0.8994406637425897 73 Smo173603 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14 0.8992185064019793 74 Smo163635 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC1/Tau95 component 0.8988875280188078 75 Smo444302 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP12 0.8987802328452743 90 Smo168147 Enzyme classification.EC_5 isomerases.EC_5.4 intramolecular transferase(50.5.4 : 315.7) & Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana 0.8985166717818296 77 Smo438142 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2 0.8985055397942739 78 Smo171199 Multi-process regulation.TOR signalling pathway.TORC complex.RAPTOR regulatory component RAPTOR1, ATRAPTOR1B, RAPTOR1B 0.8984577033288423 79 Smo440969 0.8984573223441952 80 Smo428406 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.EME1 component ATEME1B, EME1B 0.8983592177496417 81 Smo440060 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.8980955982321879 82 Smo87459 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.soluble AMP deaminase 0.8975369875160524 83 Smo230275 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKC kinase CDKC2, CDKC;2 0.8974363416314819 84 Smo131125 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO activating E1 complex.large component (SAE2) SAE2, EMB2764, ATSAE2 0.8972676740504897 85 Smo402861 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component TAF2 0.8970451927044483 86 Smo443962 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL6 0.8968260511523384 98 Smo82277 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF160/Yhh1 component ATCPSF160, CPSF160 0.8957934964189608 88 Smo96808 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG6-type DNA ligase 0.8956286494563216 89 Smo142432 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.8953413703823795 91 Smo76400 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT4 component 0.8948274209668935 92 Smo410333 0.8941088507727575 93 Smo118632 0.8940588558031698 94 Smo407119 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component 0.8934692425822113 95 Smo415389 0.8915143291906366 98 Smo148107 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2 0.8911506425011603 99 Smo160385 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.large subunit 0.8909231021252034 100