Smo146742 (RPT1A)

Aliases : RPT1A

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT1 regulatory component

Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo146742
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
Aop_g01687	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031375	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cba_g10512	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Ceric.30G008600.1	RPT1A, Ceric.30G008600	regulatory component *(RPT1) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.16	RPT1A	Protein degradation.26S proteasome.regulatory...	0.05	OrthoFinder output from all 47 species
Cre14.g625400	RPT1A	Protein degradation.26S proteasome.regulatory...	0.07	OrthoFinder output from all 47 species
Dcu_g01171	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Dde_g03314	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
GSVIVT01016655001	RPT1A	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
LOC_Os02g54340.1	RPT1A, LOC_Os02g54340	regulatory component RPT1 of 26S proteasome	0.02	OrthoFinder output from all 47 species
LOC_Os06g09290.2	RPT1A, LOC_Os06g09290	regulatory component RPT1 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Len_g10926	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Mp2g04840.1	RPT1A	regulatory component RPT1 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Msp_g08271	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Nbi_g10523	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Pp3c20_1430V3.1	RPT1A, Pp3c20_1430	regulatory particle triple-A 1A	0.02	OrthoFinder output from all 47 species
Solyc06g063140.4.1	RPT1A, Solyc06g063140	regulatory component RPT1 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Spa_g06127	RPT1A	regulatory component *(RPT1) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Zm00001e023743_P001	RPT1A, Zm00001e023743	regulatory component RPT1 of 26S proteasome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

Smo146742 (RPT1A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation