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  5. Smo130316

Smo130316 (TIC55-IV, ACD1-LIKE, PTC52)


Aliases : TIC55-IV, ACD1-LIKE, PTC52

Description : Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo130316
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Aev_g21560 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11225 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g11286 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08348 TIC55-IV,... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g07297 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08640 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035849 TIC55-IV,... not classified & original description: CDS=67-1659 0.05 OrthoFinder output from all 47 species
Ceric.23G050300.1 TIC55-IV,... not classified & original description: pacid=50610352... 0.02 OrthoFinder output from all 47 species
Cre10.g450550 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g05098 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15141 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06958 TIC55-IV,... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g40218 TIC55-IV,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g06903 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g07674 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_36694 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.05 OrthoFinder output from all 47 species
Len_g21609 TIC55-IV,... not classified & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g32038 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10436082g0010 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.09 OrthoFinder output from all 47 species
Ore_g42852 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09573 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62298 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g07246 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020460 TIC55-IV,... not classified & original description: CDS=394-819 0.03 OrthoFinder output from all 47 species
Spa_g15132 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19190 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19191 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08591 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006067_P001 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
InterPro domains Description Start Stop
IPR017941 Rieske_2Fe-2S 78 163
No external refs found!