Sequence Description Alias PCC hrr Smo55147 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 0.948198476901097 2 Smo63596 Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana 0.9360377333948036 2 Smo404832 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5 0.9323228964980423 3 Smo271457 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB 0.9239160964333955 12 Smo438672 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2 0.9230347721260069 5 Smo174737 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana 0.9167240935494366 6 Smo403333 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana LHCA5 0.915495110313188 7 Smo75269 Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana 0.911008936310555 8 Smo117112 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor APE1 0.9050904235135285 13 Smo74261 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum PDS3, PDS, PDE226 0.9031605584698429 42 Smo73428 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma ATPC1 0.9031151176674317 11 Smo64169 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component 0.9026168465671638 13 Smo143134 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component 0.898365597174215 31 Smo230423 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component CHL I2, CHLI2, CHLI-2 0.8952794805311752 14 Smo63559 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana 0.8950967906572472 39 Smo131328 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1 0.8946323868311581 18 Smo177574 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL15 component RPL15 0.8940113602123759 17 Smo25109 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase 0.8938824739757358 19 Smo444102 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component 0.8936167350818476 19 Smo185868 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A 0.8918475788821016 20 Smo92189 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase 0.887018891037246 27 Smo103361 0.884151078035947 37 Smo96317 Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana 0.8820535941967794 23 Smo109632 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.ndhA-specific mRNA splicing factor 0.878565015234649 32 Smo228849 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.8764613735021746 34 Smo133157 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A 0.875471180317226 26 Smo60716 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726 0.8733617823095084 64 Smo438154 0.8733352694190367 28 Smo85247 Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana PHR2 0.872628031055708 29 Smo417198 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.CIN phosphatase PGLP1, ATPGLP1 0.8715056763856955 30 Smo164683 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase HEMC 0.8706880080353295 31 Smo97903 Photosynthesis.photorespiration.glycerate kinase 0.8695814683077357 36 Smo429956 0.8684939710102573 55 Smo127459 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3 0.868102440578552 34 Smo442013 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana 0.8670668016108185 35 Smo272095 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component 0.8669965502131326 36 Smo413416 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL 0.8668778270050929 44 Smo169254 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.8642764690902799 68 Smo445504 0.8615163934250724 39 Smo174833 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1 0.8609524697737609 74 Smo98333 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor 0.8602301335844744 58 Smo441673 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY YCF32, PSBY 0.8601549371934089 42 Smo85565 0.8597302014479034 43 Smo271018 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1 0.8590391345630589 84 Smo28777 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component 0.8584028815097376 45 Smo233658 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PSY phytoene synthase PSY 0.8576672358119609 46 Smo423983 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4 0.8572868056852986 74 Smo93150 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.8571806867311422 60 Smo437487 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase 0.8538925655072681 50 Smo95906 Carbonic anhydrase, chloroplastic OS=Pisum sativum CA18, CA2, BETA CA2 0.8517134455734908 51 Smo75294 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 crr1 0.8516372323483904 52 Smo144149 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana 0.8512353936418773 53 Smo411048 0.8505200485309587 54 Smo448162 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana 0.8501677565112317 100 Smo134339 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC23 component PsbP OE23, OEE2, PSBP-1, PSII-P 0.8499683742494437 56 Smo270732 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component RPL9 0.8497086880033191 64 Smo438082 Protein degradation.peptidase families.serine-type peptidase activities.Rhomboid protease 0.8492038197822463 58 Smo413766 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.bifunctional methylthioribulose-1-phosphate dehydratase and enolase-phosphatase 0.8488105742730849 85 Smo107842 Probable GTP-binding protein OBGC1, chloroplastic OS=Oryza sativa subsp. indica CPSAR1, EMB269, ATOBGC 0.8484857365557694 72 Smo439533 0.8480666252075562 62 Smo73714 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 0.8471634877107905 76 Smo233481 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b 0.8463648373207215 70 Smo139888 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PPL1 protein PPL1 0.8459164044393651 65 Smo164192 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PPL1 protein PPL1 0.8459164044393651 66 Smo81106 0.8457635361596904 68 Smo30996 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor 0.8455441539336361 69 Smo438240 Protein degradation.peptidase families.serine-type peptidase activities.Rhomboid protease 0.8443854591961417 71 Smo447828 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 0.8439310068596747 87 Smo107348 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL6 component 0.8432079860484306 74 Smo166437 0.8426937293886753 75 Smo98540 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component 0.8404723224846667 76 Smo82847 Nutrient uptake.iron uptake.iron storage.non-haem ferritin ATFER3, FER3 0.8387763002138863 78 Smo57383 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component 0.8373028844960575 79 Smo413620 0.837017993639661 80 Smo83230 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease 0.8369216931008125 87 Smo270155 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter GPT1, ATGPT1 0.8363148613828671 82 Smo93906 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase CHLM 0.8361556457926889 83 Smo272235 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.8360901719925196 84 Smo147927 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit 0.8342529732007501 85 Smo449377 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.834247437494613 86 Smo75361 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaF PSAF 0.8331650253465074 88 Smo270821 0.8328721604040712 89 Smo134640 0.8323486551001079 92 Smo149722 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component LHCB4.2 0.8313830464668528 93 Smo82002 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor CRM3, HCF152 0.8306388759561554 94 Smo227735 Redox homeostasis.enzymatic reactive oxygen species scavengers.superoxide dismutase activities.copper/zinc superoxide dismutase CZSOD2, CSD2 0.8293697525279667 95 Smo437924 Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica DFL2, GH3-10 0.8291047123394589 96 Smo126894 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) 0.8288479814375823 97 Smo443172 Fruit protein pKIWI502 OS=Actinidia deliciosa 0.8276379979280806 98 Smo229587 Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar 0.8259676039096069 100