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  5. Smo125776

Smo125776 (MSH7, ATMSH7, MSH6-2)


Aliases : MSH7, ATMSH7, MSH6-2

Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH7 component


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo125776
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242090 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Als_g23299 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.05 OrthoFinder output from all 47 species
Aop_g10876 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71892.t1 MSH6-1, ATMSH6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G018600.1 MSH6-1, ATMSH6,... component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
LOC_Os09g24220.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.04 OrthoFinder output from all 47 species
Ppi_g08246 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 416 633
No external refs found!