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  5. Smo109541

Smo109541 (PRP39)


Aliases : PRP39

Description : Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo109541

  • Target Alias Description ECC score Gene Family Method Actions
    AMTR_s00179p00033790 AT PRP39-2,... No description available 0.05 OrthoFinder output from all 47 species
    Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
    Adi_g059074 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
    Ala_g21759 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
    Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
    Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
    Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.08 OrthoFinder output from all 47 species
    Cre16.g670300 PRP39 No description available 0.02 OrthoFinder output from all 47 species
    Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
    Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
    Zm00001e004246_P001 AT PRP39-2,... pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
    MF GO:0003676 nucleic acid binding IEP HCCA
    MF GO:0005524 ATP binding IEP HCCA
    BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
    BP GO:0006364 rRNA processing IEP HCCA
    BP GO:0006396 RNA processing IEP HCCA
    BP GO:0006397 mRNA processing IEP HCCA
    BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
    BP GO:0006886 intracellular protein transport IEP HCCA
    BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
    BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
    BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP HCCA
    BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
    BP GO:0008104 protein localization IEP HCCA
    BP GO:0008150 biological_process IEP HCCA
    BP GO:0009987 cellular process IEP HCCA
    BP GO:0010564 regulation of cell cycle process IEP HCCA
    BP GO:0010639 negative regulation of organelle organization IEP HCCA
    BP GO:0010948 negative regulation of cell cycle process IEP HCCA
    BP GO:0010965 regulation of mitotic sister chromatid separation IEP HCCA
    BP GO:0015031 protein transport IEP HCCA
    BP GO:0016070 RNA metabolic process IEP HCCA
    BP GO:0016071 mRNA metabolic process IEP HCCA
    BP GO:0016072 rRNA metabolic process IEP HCCA
    BP GO:0022402 cell cycle process IEP HCCA
    BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
    BP GO:0031577 spindle checkpoint signaling IEP HCCA
    BP GO:0033036 macromolecule localization IEP HCCA
    BP GO:0033043 regulation of organelle organization IEP HCCA
    BP GO:0033044 regulation of chromosome organization IEP HCCA
    BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
    BP GO:0033046 negative regulation of sister chromatid segregation IEP HCCA
    BP GO:0033047 regulation of mitotic sister chromatid segregation IEP HCCA
    BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP HCCA
    BP GO:0034470 ncRNA processing IEP HCCA
    BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
    BP GO:0035556 intracellular signal transduction IEP HCCA
    BP GO:0045184 establishment of protein localization IEP HCCA
    BP GO:0045786 negative regulation of cell cycle IEP HCCA
    BP GO:0045839 negative regulation of mitotic nuclear division IEP HCCA
    BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP HCCA
    BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
    BP GO:0046483 heterocycle metabolic process IEP HCCA
    BP GO:0046907 intracellular transport IEP HCCA
    BP GO:0048519 negative regulation of biological process IEP HCCA
    BP GO:0048523 negative regulation of cellular process IEP HCCA
    BP GO:0050789 regulation of biological process IEP HCCA
    BP GO:0050794 regulation of cellular process IEP HCCA
    BP GO:0051128 regulation of cellular component organization IEP HCCA
    BP GO:0051129 negative regulation of cellular component organization IEP HCCA
    BP GO:0051641 cellular localization IEP HCCA
    BP GO:0051649 establishment of localization in cell IEP HCCA
    BP GO:0051726 regulation of cell cycle IEP HCCA
    BP GO:0051783 regulation of nuclear division IEP HCCA
    BP GO:0051784 negative regulation of nuclear division IEP HCCA
    BP GO:0051983 regulation of chromosome segregation IEP HCCA
    BP GO:0051985 negative regulation of chromosome segregation IEP HCCA
    BP GO:0065007 biological regulation IEP HCCA
    BP GO:0070727 cellular macromolecule localization IEP HCCA
    BP GO:0071173 spindle assembly checkpoint signaling IEP HCCA
    BP GO:0071174 mitotic spindle checkpoint signaling IEP HCCA
    BP GO:0071702 organic substance transport IEP HCCA
    BP GO:0071705 nitrogen compound transport IEP HCCA
    BP GO:0090304 nucleic acid metabolic process IEP HCCA
    MF GO:0097159 organic cyclic compound binding IEP HCCA
    BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
    MF GO:1901363 heterocyclic compound binding IEP HCCA
    BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
    BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
    BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
    BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP HCCA
    BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
    BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP HCCA
    BP GO:1903047 mitotic cell cycle process IEP HCCA
    BP GO:1905818 regulation of chromosome separation IEP HCCA
    BP GO:1905819 negative regulation of chromosome separation IEP HCCA
    BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP HCCA
    BP GO:2001251 negative regulation of chromosome organization IEP HCCA

    No InterPro domains available for this sequence

    No external refs found!