LOC_Os12g41920.2 (ATTRB1, TRB1, LOC_Os12g41920)


Aliases : ATTRB1, TRB1, LOC_Os12g41920

Description : PRC2-recruiting factor (TRB). transcription factor (MYB-related)


Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41920.2

Target Alias Description ECC score Gene Family Method Actions
Als_g00855 ATTRB1, TRB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21440 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Dcu_g44110 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01004303001 ATTRB1, TRB1 No description available 0.04 OrthoFinder output from all 47 species
Mp3g05000.1 ATTRB1, TRB1 PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Solyc02g064630.4.1 ATTRB1, TRB1,... PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 123 179
IPR001005 SANT/Myb 5 56
No external refs found!