1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g39320.1

LOC_Os12g39320.1 (HYP1, ATHYP1, LOC_Os12g39320)


Aliases : HYP1, ATHYP1, LOC_Os12g39320

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g39320.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00143150 evm_27.TU.AmTr_v1... Solute transport.channels.OSCA calcium-permeable channel 0.05 OrthoFinder output from all 47 species
AT1G11960 No alias ERD (early-responsive to dehydration stress) family protein 0.05 OrthoFinder output from all 47 species
AT1G30360 ERD4 Early-responsive to dehydration stress protein (ERD4) 0.03 OrthoFinder output from all 47 species
AT1G69450 No alias Early-responsive to dehydration stress protein (ERD4) 0.04 OrthoFinder output from all 47 species
AT3G54510 No alias Early-responsive to dehydration stress protein (ERD4) 0.03 OrthoFinder output from all 47 species
Adi_g009972 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012352 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09676 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16435 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39285 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51209 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57219.t1 Aspi01Gene57219 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63971.t1 ERD4, Aspi01Gene63971 calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0373.g067190 ERD4 calcium-permeable channel *(OSCA) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0795.g087273 ERD4 not classified & original description: CDS=84-998 0.03 OrthoFinder output from all 47 species
Cre08.g360500 No alias CSC1-like protein At1g62320 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g21426 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17232 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40944 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26256 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000831001 No alias Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species
GSVIVT01011543001 No alias Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species
GSVIVT01012666001 No alias Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species
Gb_08556 ERD4 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Gb_11287 No alias calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Len_g15514 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34245 ERD4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10186845g0010 No alias CSC1-like protein At3g21620 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10428484g0010 HYP1, ATHYP1 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
MA_630721g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g04933 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13770 No alias calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17620 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30494 ERD4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17063 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03204 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29118 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Smo41460 ERD4 Solute transport.channels.OSCA calcium-permeable channel 0.02 OrthoFinder output from all 47 species
Solyc02g036210.1.1 Solyc02g036210 Protein OSCA1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc02g081030.4.1 Solyc02g081030 calcium-permeable channel (OSCA) 0.05 OrthoFinder output from all 47 species
Tin_g25259 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012117_P001 RXW8, Zm00001e012117 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027815 CSC1/OSCA1-like_cyt 174 329
IPR032880 Csc1/OSCA1-like_N 6 153
IPR003864 CSC1/OSCA1-like_7TM 342 606
No external refs found!