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  5. LOC_Os12g36170.1

LOC_Os12g36170.1 (LOC_Os12g36170)


Aliases : LOC_Os12g36170

Description : component CAP-D2B of condensin II complex


Gene families : OG0008196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008196_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g36170.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00227490 No alias Cell cycle.mitosis and meiosis.chromatin... 0.17 OrthoFinder output from all 47 species
AT4G15890 No alias binding 0.03 OrthoFinder output from all 47 species
Als_g15728 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Aop_g06266 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Aspi01Gene59031.t1 Aspi01Gene59031 component *(CAP-D2B) of condensin II complex & original... 0.11 OrthoFinder output from all 47 species
Azfi_s0136.g050948 No alias component *(CAP-D2B) of condensin II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G026000.1 Ceric.01G026000 component *(CAP-D2B) of condensin II complex & original... 0.18 OrthoFinder output from all 47 species
Cre05.g241150 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder output from all 47 species
Dac_g36324 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g41476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14984 No alias component *(CAP-D2B) of condensin II complex & original... 0.15 OrthoFinder output from all 47 species
GSVIVT01017722001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.18 OrthoFinder output from all 47 species
Gb_33189 No alias component CAP-D2B of condensin II complex 0.13 OrthoFinder output from all 47 species
Len_g59607 No alias component *(CAP-D2B) of condensin II complex & original... 0.04 OrthoFinder output from all 47 species
MA_8028g0010 No alias component CAP-D2B of condensin II complex 0.11 OrthoFinder output from all 47 species
MA_92126g0010 No alias component CAP-D2B of condensin II complex 0.1 OrthoFinder output from all 47 species
Mp4g01570.1 No alias component CAP-D2B of condensin II complex 0.12 OrthoFinder output from all 47 species
Msp_g01246 No alias component *(CAP-D2B) of condensin II complex & original... 0.03 OrthoFinder output from all 47 species
Nbi_g09903 No alias component *(CAP-D2B) of condensin II complex & original... 0.16 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005664 No alias component *(CAP-D2B) of condensin II complex & original... 0.09 OrthoFinder output from all 47 species
Solyc12g099510.3.1 Solyc12g099510 component CAP-D2B of condensin II complex 0.03 OrthoFinder output from all 47 species
Tin_g09167 No alias component *(CAP-D2B) of condensin II complex & original... 0.13 OrthoFinder output from all 47 species
Zm00001e039691_P001 Zm00001e039691 component CAP-D2B of condensin II complex 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR032682 Cnd1_C 888 1066
No external refs found!