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  5. LOC_Os12g09610.1

LOC_Os12g09610.1 (LOC_Os12g09610)


Aliases : LOC_Os12g09610

Description : no hits & (original description: none)


Gene families : OG0005591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g09610.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g17502 No alias component *(NOT11) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Cba_g03857 No alias component *(NOT11) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
MA_48786g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g05910.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g024510.3.1 Solyc04g024510 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0030014 CCR4-NOT complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0050080 malonyl-CoA decarboxylase activity IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019312 CNOT11 288 412
No external refs found!