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  5. LOC_Os12g07260.1

LOC_Os12g07260.1 (PPR596, LOC_Os12g07260)


Aliases : PPR596, LOC_Os12g07260

Description : RNA editing factor (POCO)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g07260.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00019470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.08 OrthoFinder output from all 47 species
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.06 OrthoFinder output from all 47 species
AMTR_s00135p00094680 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27460... 0.01 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.2 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 OrthoFinder output from all 47 species
AT5G09450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g04726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g21533 No alias RNA editing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.06 OrthoFinder output from all 47 species
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.12 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.1 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.08 OrthoFinder output from all 47 species
Gb_03508 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.1 OrthoFinder output from all 47 species
Len_g15360 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17918 No alias RNA editing factor *(POCO) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g39062 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
MA_492314g0010 No alias RNA editing factor (POCO) 0.07 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.09 OrthoFinder output from all 47 species
Ore_g18305 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Smo406783 PPR596 Pentatricopeptide repeat-containing protein At1g80270,... 0.07 OrthoFinder output from all 47 species
Smo420704 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.04 OrthoFinder output from all 47 species
Solyc01g100580.3.1 Solyc01g100580 Pentatricopeptide repeat-containing protein At4g01990,... 0.05 OrthoFinder output from all 47 species
Solyc06g005140.3.1 Solyc06g005140 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
Solyc07g063220.4.1 Solyc07g063220 Pentatricopeptide repeat-containing protein At4g21705,... 0.05 OrthoFinder output from all 47 species
Solyc11g006380.2.1 Solyc11g006380 Pentatricopeptide repeat-containing protein At1g60770... 0.17 OrthoFinder output from all 47 species
Solyc12g020050.2.1 PPR596, Solyc12g020050 RNA editing factor (POCO) 0.12 OrthoFinder output from all 47 species
Zm00001e017396_P001 PPR596, Zm00001e017396 RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
Zm00001e025470_P001 PPR596, Zm00001e025470 RNA editing factor (POCO) 0.09 OrthoFinder output from all 47 species
Zm00001e026211_P002 Zm00001e026211 Pentatricopeptide repeat-containing protein At1g02370,... 0.12 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 321
IPR033443 PPR_long 420 538
No external refs found!