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  5. LOC_Os12g06910.1

LOC_Os12g06910.1 (LOC_Os12g06910)


Aliases : LOC_Os12g06910

Description : pre-40S ribosomal subunit assembly factor (UTP22)


Gene families : OG0006078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06910.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G63810 No alias CONTAINS InterPro DOMAIN/s: Nrap protein... 0.17 OrthoFinder output from all 47 species
Als_g15877 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Aop_g09599 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene72457.t1 Aspi01Gene72457 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Cba_g13464 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Ceric.24G063300.1 Ceric.24G063300 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g332800 No alias No description available 0.08 OrthoFinder output from all 47 species
Dcu_g25897 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.09 OrthoFinder output from all 47 species
Ehy_g30721 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01018952001 No alias No description available 0.14 OrthoFinder output from all 47 species
Lfl_g02369 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
MA_10436389g0010 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.05 OrthoFinder output from all 47 species
Mp6g08990.1 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.14 OrthoFinder output from all 47 species
Msp_g26114 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Ore_g26767 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Pir_g16349 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024789 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Sam_g08101 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.06 OrthoFinder output from all 47 species
Smo407792 No alias No description available 0.09 OrthoFinder output from all 47 species
Solyc02g085230.3.1 Solyc02g085230 pre-40S ribosomal subunit assembly factor (UTP22) 0.14 OrthoFinder output from all 47 species
Tin_g02885 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Zm00001e018445_P001 Zm00001e018445 pre-40S ribosomal subunit assembly factor (UTP22) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR035082 Nrap_D1 148 274
IPR035371 Nrap_D6 891 1027
IPR035368 Nrap_D3 471 524
IPR035367 Nrap_D2 318 402
IPR035370 Nrap_D5 725 876
IPR035369 Nrap_D4 550 722
No external refs found!