1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g06560.1

LOC_Os12g06560.1 (LOC_Os12g06560)


Aliases : LOC_Os12g06560

Description : no hits & (original description: none)


Gene families : OG0000995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000995_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06560.1

Target Alias Description ECC score Gene Family Method Actions
AT3G62050 No alias Putative endonuclease or glycosyl hydrolase 0.03 OrthoFinder output from all 47 species
AT5G64710 No alias Putative endonuclease or glycosyl hydrolase 0.02 OrthoFinder output from all 47 species
Aev_g08983 EDA32 endoribonuclease *(MNU) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39952 EDA32 endoribonuclease *(MNU) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05517 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026616001 No alias No description available 0.05 OrthoFinder output from all 47 species
Smo113855 EDA32 No description available 0.02 OrthoFinder output from all 47 species
Smo419584 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc11g005440.2.1 Solyc11g005440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g13107 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_MARF1 54 190
IPR025605 OST-HTH/LOTUS_dom 763 821
IPR025605 OST-HTH/LOTUS_dom 260 312
No external refs found!