LOC_Os11g41130.2 (VPS26B, LOC_Os11g41130)

Aliases : VPS26B, LOC_Os11g41130

Description : component VPS26 of Retromer protein recycling complex

Gene families : OG0003204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003204_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g41130.2
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
Als_g03641	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Azfi_s0081.g038547	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020589.5	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Cre09.g414200	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Dcu_g02537	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01038607001	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.05	OrthoFinder output from all 47 species
Gb_01256	VPS26B	component VPS26 of Retromer protein recycling complex	0.04	OrthoFinder output from all 47 species
Lfl_g03683	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Mp1g01930.1	VPS26B	component VPS26 of Retromer protein recycling complex	0.02	OrthoFinder output from all 47 species
Nbi_g00731	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Ore_g06110	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Pir_g00854	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011183	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Smo158309	VPS26B	Vesicle trafficking.endomembrane trafficking.protein...	0.03	OrthoFinder output from all 47 species
Spa_g09782	VPS26B	component *(VPS26) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006621	protein retention in ER lumen	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0031011	Ino80 complex	IEP	HCCA
BP	GO:0032507	maintenance of protein location in cell	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0045185	maintenance of protein location	IEP	HCCA
MF	GO:0046923	ER retention sequence binding	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051651	maintenance of location in cell	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0072595	maintenance of protein localization in organelle	IEP	HCCA
CC	GO:0097346	INO80-type complex	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028934	Vps26-related	3	246

External Links

No external refs found!

LOC_Os11g41130.2 (VPS26B, LOC_Os11g41130)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation