LOC_Os11g28365.1 (ATUBP5, UBP5, PDE323,...)

Aliases : ATUBP5, UBP5, PDE323, LOC_Os11g28365

Description : deubiquitinase (UBP5|8-11)

Gene families : OG0001745 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001745_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g28365.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00234520	ATUBP5, UBP5,...	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
AT2G40930	ATUBP5, UBP5, PDE323	ubiquitin-specific protease 5	0.03	OrthoFinder output from all 47 species
Aev_g07324	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g07429	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g00801	UBP10	deubiquitinase *(UBP5/8-11) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06968	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0039.g026427	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: CDS=459-2849	0.02	OrthoFinder output from all 47 species
Dcu_g08300	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02984	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09869	UBP8	deubiquitinase *(UBP5/8-11) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01019677001	UBP10	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01022582001	UBP8	Protein degradation.peptidase families.cysteine-type...	0.02	OrthoFinder output from all 47 species
Gb_06866	ATUBP5, UBP5, PDE323	deubiquitinase (UBP5\|8-11)	0.03	OrthoFinder output from all 47 species
Lfl_g02368	ATUBP5, UBP5, PDE323	deubiquitinase *(UBP5/8-11) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10425850g0010	ATUBP5, UBP5, PDE323	Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_11753g0010	UBP9	deubiquitinase (UBP5\|8-11)	0.06	OrthoFinder output from all 47 species
Pir_g01688	UBP10	deubiquitinase *(UBP5/8-11) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19443	No alias	deubiquitinase *(UBP5/8-11) & original description: none	0.03	OrthoFinder output from all 47 species
Smo61965	UBP9	Protein degradation.peptidase families.cysteine-type...	0.02	OrthoFinder output from all 47 species
Solyc09g019970.3.1	ATUBP5, UBP5,...	deubiquitinase (UBP5\|8-11)	0.02	OrthoFinder output from all 47 species
Zm00001e008908_P001	ATUBP5, UBP5,...	deubiquitinase (UBP5\|8-11)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	51	302

External Links

No external refs found!

LOC_Os11g28365.1 (ATUBP5, UBP5, PDE323,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation