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  5. LOC_Os11g24570.1

LOC_Os11g24570.1 (emb1796, LOC_Os11g24570)


Aliases : emb1796, LOC_Os11g24570

Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana (sp|q9m3a8|pp273_arath : 503.0)


Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g24570.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00236970 emb1796,... Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Gb_33747 emb1796 Pentatricopeptide repeat-containing protein At3g49240,... 0.02 OrthoFinder output from all 47 species
Gb_33759 GRP23 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g30240.1 GRP23, LOC_Os05g30240 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
Solyc03g083280.4.1 emb1796, Solyc03g083280 Pentatricopeptide repeat-containing protein At3g49240,... 0.04 OrthoFinder output from all 47 species
Zm00001e004732_P001 GRP23, Zm00001e004732 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
Zm00001e020614_P001 emb1796, Zm00001e020614 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
Zm00001e032163_P001 emb1796, Zm00001e032163 Pentatricopeptide repeat-containing protein At3g49240,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 132 183
IPR002885 Pentatricopeptide_repeat 321 346
IPR002885 Pentatricopeptide_repeat 362 391
IPR002885 Pentatricopeptide_repeat 285 313
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 463 510
No external refs found!