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  5. LOC_Os11g19250.1

LOC_Os11g19250.1 (LOC_Os11g19250)


Aliases : LOC_Os11g19250

Description : no hits & (original description: none)


Gene families : OG0004892 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004892_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g19250.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G42440 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.12 OrthoFinder output from all 47 species
Aop_g09176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70647.t1 Aspi01Gene70647 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0402.g068300 No alias not classified & original description: CDS=78-2465 0.04 OrthoFinder output from all 47 species
Ceric.23G085500.1 Ceric.23G085500 not classified & original description: pacid=50610969... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.35 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre16.g673700 No alias No description available 0.15 OrthoFinder output from all 47 species
Dac_g14047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08205 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g00851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013363001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_29644 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g09049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_74958g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_79106g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_834870g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp4g14950.1 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Ore_g08359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16423 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo123319 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc04g082330.3.1 Solyc04g082330 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species
Spa_g06757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029566_P001 Zm00001e029566 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007034 BMS1_TSR1_C 481 776
IPR012948 AARP2CN 229 307
No external refs found!