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  5. LOC_Os11g06680.2

LOC_Os11g06680.2 (LOC_Os11g06680)


Aliases : LOC_Os11g06680

Description : no hits & (original description: none)


Gene families : OG0000995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000995_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g06680.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00044580 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G62050 No alias Putative endonuclease or glycosyl hydrolase 0.02 OrthoFinder output from all 47 species
AT5G64710 No alias Putative endonuclease or glycosyl hydrolase 0.03 OrthoFinder output from all 47 species
Adi_g060136 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08983 EDA32 endoribonuclease *(MNU) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39952 EDA32 endoribonuclease *(MNU) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57532 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04492 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G082600.1 EDA32, Ceric.02G082600 not classified & original description: pacid=50586080... 0.02 OrthoFinder output from all 47 species
Dcu_g04911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05517 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026616001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os07g44320.1 LOC_Os07g44320 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Len_g11787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_24887g0010 EDA32 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g20057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo419584 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g12543 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035662_P002 Zm00001e035662 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_MARF1 58 193
No external refs found!