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  5. LOC_Os10g41430.1

LOC_Os10g41430.1 (CYCP4;1, LOC_Os10g41430)


Aliases : CYCP4;1, LOC_Os10g41430

Description : cyclin (CYCP)


Gene families : OG0000303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000303_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41430.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT3G60550 CYCP3;2 cyclin p3;2 0.07 OrthoFinder output from all 47 species
AT3G63120 CYCP1;1 cyclin p1;1 0.04 OrthoFinder output from all 47 species
AT5G07450 CYCP4;3 cyclin p4;3 0.03 OrthoFinder output from all 47 species
Adi_g006736 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aev_g12842 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ala_g03971 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g36160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04798 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Als_g21897 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Als_g27688 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Als_g37867 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aob_g07900 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g00597 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Aop_g05309 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g05761 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g11744 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aop_g14532 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35806.t1 CYCP2;1, Aspi01Gene35806 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38865.t1 CYCP3;2, Aspi01Gene38865 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene58408.t1 CYCP2;1, Aspi01Gene58408 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g014998 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cba_g07393 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cba_g10117 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G089100.1 CYCP3;2, Ceric.07G089100 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G034800.1 CYCP2;1, Ceric.10G034800 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Ceric.21G011000.1 CYCP4;1, Ceric.21G011000 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Dac_g02043 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dac_g04053 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Dac_g21403 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Dac_g21404 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dac_g33827 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07480 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Dcu_g13472 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05568 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ehy_g06469 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01000045001 No alias Cell cycle.regulation.cyclins.CYCP-type cyclin 0.03 OrthoFinder output from all 47 species
GSVIVT01018166001 cycp3;1 Cell cycle.regulation.cyclins.CYCP-type cyclin 0.03 OrthoFinder output from all 47 species
GSVIVT01018304001 CYCP4;1 Cell cycle.regulation.cyclins.CYCP-type cyclin 0.02 OrthoFinder output from all 47 species
LOC_Os02g03294.1 CYCP4;1, LOC_Os02g03294 cyclin (CYCP) 0.04 OrthoFinder output from all 47 species
LOC_Os04g46000.1 CYCP4;1, LOC_Os04g46000 cyclin (CYCP) 0.02 OrthoFinder output from all 47 species
Len_g03235 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
MA_10435168g0020 CYCP3;2 cyclin (CYCP) 0.05 OrthoFinder output from all 47 species
MA_34826g0010 CYCP4;1 cyclin (CYCP) 0.03 OrthoFinder output from all 47 species
MA_57087g0010 cycp3;1 cyclin (CYCP) 0.04 OrthoFinder output from all 47 species
MA_92793g0010 cycp3;1 cyclin (CYCP) 0.04 OrthoFinder output from all 47 species
Mp7g06850.1 CYCP4;1 cyclin (CYCP) 0.02 OrthoFinder output from all 47 species
Msp_g27330 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Nbi_g01825 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Nbi_g22699 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ore_g08217 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ore_g22726 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Ore_g24433 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ore_g28947 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Pnu_g10155 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ppi_g00643 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ppi_g07325 CYCP3;2 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Ppi_g13236 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29737 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g62553 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007745 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sam_g05185 No alias regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sam_g16477 No alias regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Solyc01g089850.4.1 CYCP4;1, Solyc01g089850 cyclin (CYCP) 0.05 OrthoFinder output from all 47 species
Solyc01g090800.3.1 CYCP3;2, Solyc01g090800 cyclin (CYCP) 0.03 OrthoFinder output from all 47 species
Solyc03g093790.3.1 CYCP4;1, Solyc03g093790 cyclin (CYCP) 0.05 OrthoFinder output from all 47 species
Solyc09g065200.4.1 CYCP1;1, Solyc09g065200 cyclin (CYCP) 0.05 OrthoFinder output from all 47 species
Spa_g03908 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g04705 CYCP2;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g12296 CYCP3;2 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g12297 CYCP3;2 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g16879 CYCP3;2 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g29004 CYCP3;2 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g39740 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g47429 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Tin_g05449 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Tin_g27209 cycp3;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Tin_g28471 CYCP4;1 regulatory protein *(CYCP(CYCU) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Zm00001e007314_P001 cycp3;1, Zm00001e007314 cyclin (CYCP) 0.03 OrthoFinder output from all 47 species
Zm00001e007371_P002 CYCP4;3, Zm00001e007371 cyclin (CYCP) 0.02 OrthoFinder output from all 47 species
Zm00001e015290_P001 CYCP4;3, Zm00001e015290 cyclin (CYCP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA Interproscan
MF GO:0019901 protein kinase binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013922 Cyclin_PHO80-like 39 150
No external refs found!