LOC_Os10g38278.1 (RPS2, LOC_Os10g38278)

Aliases : RPS2, LOC_Os10g38278

Description : component psRPS2 of small ribosomal subunit proteome

Gene families : OG0003809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003809_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g38278.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108730	RPS2,...	30S ribosomal protein S2, chloroplastic OS=Amborella trichopoda	0.09	OrthoFinder output from all 47 species
ATCG00160	RPS2	ribosomal protein S2	0.43	OrthoFinder output from all 47 species
Aev_g16539	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.42	OrthoFinder output from all 47 species
Aev_g39734	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.25	OrthoFinder output from all 47 species
Als_g16619	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g12484	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g20059	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Azfi_s0026.g023365	RPS2	not classified & original description: CDS=1-585	0.09	OrthoFinder output from all 47 species
Cba_g05041	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Ceric.02G012600.1	RPS2, Ceric.02G012600	not classified & original description: pacid=50585479...	0.16	OrthoFinder output from all 47 species
Ceric.02G016700.1	RPS2, Ceric.02G016700	not classified & original description: pacid=50584985...	0.05	OrthoFinder output from all 47 species
Ceric.13G052300.1	RPS2, Ceric.13G052300	component *(uS2c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.1Z023000.1	RPS2, Ceric.1Z023000	component *(uS2c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ceric.1Z286900.1	Ceric.1Z286900	component *(uS2m) of small mitoribosomal-subunit...	0.17	OrthoFinder output from all 47 species
Ceric.1Z298500.1	Ceric.1Z298500	component *(uS2m) of small mitoribosomal-subunit...	0.17	OrthoFinder output from all 47 species
Ceric.29G005000.1	RPS2, Ceric.29G005000	not classified & original description: pacid=50624534...	0.13	OrthoFinder output from all 47 species
Ceric.34G005100.1	RPS2, Ceric.34G005100	component *(uS2c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.38G010300.1	RPS2, Ceric.38G010300	component *(uS2c) of small plastid ribosomal-subunit...	0.32	OrthoFinder output from all 47 species
Dcu_g24434	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Gb_26286	RPS2	ATP synthase subunit alpha, chloroplastic OS=Cycas...	0.04	OrthoFinder output from all 47 species
LOC_Os10g21234.1	RPS2, LOC_Os10g21234	component psRPS2 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Len_g21426	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Lfl_g12065	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.22	OrthoFinder output from all 47 species
Mp3g24030.1	RPS2	30S ribosomal protein S2, chloroplastic OS=Marchantia...	0.08	OrthoFinder output from all 47 species
Mp8g10410.1	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Msp_g04897	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Nbi_g07949	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Nbi_g38100	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Pir_g08884	RPS2	not classified & original description: none	0.21	OrthoFinder output from all 47 species
Ppi_g53005	RPS2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g02919	No alias	component *(uS2c) of small plastid ribosomal-subunit...	0.18	OrthoFinder output from all 47 species
Sam_g10265	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Smo137779	RPS2	Protein biosynthesis.organelle translation...	0.15	OrthoFinder output from all 47 species
Solyc00g500051.1.1	RPS2, Solyc00g500051	component psRPS2 of small ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Solyc00g500134.1.1	RPS2, Solyc00g500134	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
Solyc00g500204.1.1	RPS2, Solyc00g500204	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
Solyc00g500291.1.1	RPS2, Solyc00g500291	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
Solyc00g500320.1.1	RPS2, Solyc00g500320	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
Solyc09g018555.1.1	RPS2, Solyc09g018555	30S ribosomal protein S2, chloroplastic OS=Nicotiana...	0.19	OrthoFinder output from all 47 species
Solyc12g062630.1.1	RPS2, Solyc12g062630	30S ribosomal protein S2, chloroplastic OS=Solanum...	0.28	OrthoFinder output from all 47 species
Solyc12g062640.2.1	RPS2, Solyc12g062640	30S ribosomal protein S2, chloroplastic OS=Solanum...	0.02	OrthoFinder output from all 47 species
Tin_g39248	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Zm00001e013128_P001	RPS2, Zm00001e013128	component psRPS2 of small ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Zm00001e042037_P001	RPS2, Zm00001e042037	30S ribosomal protein S2, chloroplastic OS=Zea mays...	0.07	OrthoFinder output from all 47 species
Zm00001e042059_P001	RPS2, Zm00001e042059	30S ribosomal protein S2, chloroplastic OS=Zea mays...	0.07	OrthoFinder output from all 47 species
Zm00001e042104_P001	RPS2, Zm00001e042104	30S ribosomal protein S2, chloroplastic OS=Zea mays...	0.05	OrthoFinder output from all 47 species
Zm00001e042168_P001	RPS2, Zm00001e042168	30S ribosomal protein S2, chloroplastic OS=Zea mays...	0.07	OrthoFinder output from all 47 species
Zm00001e042233_P001	RPS2, Zm00001e042233	component psRPS2 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Zm00001e042272_P001	RPS2, Zm00001e042272	component psRPS2 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Zm00001e042360_P001	RPS2, Zm00001e042360	component psRPS2 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Zm00001e042428_P001	RPS2, Zm00001e042428	component psRPS2 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
CC	GO:0031361	obsolete integral component of thylakoid membrane	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	13	228

External Links

No external refs found!

LOC_Os10g38278.1 (RPS2, LOC_Os10g38278)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation