LOC_Os10g28340.1 (AT-HSFA6B, HSFA6B,...)

Aliases : AT-HSFA6B, HSFA6B, LOC_Os10g28340

Description : transcription factor (HSF)

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g28340.1
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00115830	AT-HSFA6B,...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	OrthoFinder output from all 47 species
AT2G26150	HSFA2, ATHSFA2	heat shock transcription factor A2	0.17	OrthoFinder output from all 47 species
AT3G51910	AT-HSFA7A, HSFA7A	heat shock transcription factor A7A	0.04	OrthoFinder output from all 47 species
AT3G63350	HSFA7B, AT-HSFA7B	winged-helix DNA-binding transcription factor family protein	0.07	OrthoFinder output from all 47 species
AT5G03720	HSFA3, AT-HSFA3	heat shock transcription factor A3	0.04	OrthoFinder output from all 47 species
Adi_g043488	No alias	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g32508	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g48723	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g55303	AT-HSFB3, HSFB3	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g25683	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g17764	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g22391	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene55061.t1	HSFB4, SCZ,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g10764	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.05G086000.1	ATHSF1, HSF1,...	HSF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g16680	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Dcu_g13631	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g14953	ATHSF1, HSF1,...	transcriptional regulator *(HsfA1) & original description: none	0.09	OrthoFinder output from all 47 species
Dcu_g37621	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g05337	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g13390	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g13408	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g16595	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g19849	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47312	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01003118001	AT-HSFA6B, HSFA6B	RNA biosynthesis.transcriptional activation.HSF (heat...	0.13	OrthoFinder output from all 47 species
GSVIVT01010595001	AT-HSFB2A, HSFB2A	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
GSVIVT01035385001	HSFA2, ATHSFA2	RNA biosynthesis.transcriptional activation.HSF (heat...	0.11	OrthoFinder output from all 47 species
Gb_11758	AT-HSFA6B, HSFA6B	transcription factor (HSF). transcriptional regulator (HsfA1)	0.08	OrthoFinder output from all 47 species
Gb_19891	HSFA1B, ATHSF3,...	transcription factor (HSF)	0.07	OrthoFinder output from all 47 species
LOC_Os06g36930.1	AT-HSFA7A,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
Lfl_g08915	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g26028	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g39595	HSFA1E, ATHSFA1E	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_29913g0010	AT-HSFA6B, HSFA6B	transcription factor (HSF). transcriptional regulator (HsfA1)	0.02	OrthoFinder output from all 47 species
Nbi_g01134	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g14896	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g21051	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g20571	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38071	HSFA1E, ATHSFA1E	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g06498	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g14485	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06198	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g35931	HSFA1E, ATHSFA1E	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo107503	ATHSF1, HSF1,...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.11	OrthoFinder output from all 47 species
Solyc03g097120.3.1	HSFA1B, ATHSF3,...	transcription factor (HSF). transcriptional regulator (HsfA1)	0.03	OrthoFinder output from all 47 species
Solyc06g053960.3.1	AT-HSFA6B,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Solyc07g040680.3.1	HSFA2, ATHSFA2,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Solyc08g080540.3.1	AT-HSFB2B,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Solyc09g065660.4.1	AT-HSFA6B,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Spa_g08441	HSFA1E, ATHSFA1E	HSF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g10058	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g52649	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g53750	HSF4, HSFB1,...	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g55789	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g04512	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g20093	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Zm00001e000467_P001	AT-HSFA6B,...	transcription factor (HSF)	0.09	OrthoFinder output from all 47 species
Zm00001e000890_P002	ATHSF1, HSF1,...	transcription factor (HSF)	0.11	OrthoFinder output from all 47 species
Zm00001e003755_P002	AT-HSFB2A,...	transcription factor (HSF)	0.12	OrthoFinder output from all 47 species
Zm00001e004752_P001	AT-HSFA6B,...	transcription factor (HSF)	0.28	OrthoFinder output from all 47 species
Zm00001e024268_P001	AT-HSFB2A,...	transcription factor (HSF)	0.12	OrthoFinder output from all 47 species
Zm00001e029052_P001	HSFA4C, RHA1,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Zm00001e032930_P002	AT-HSFA6B,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e034782_P002	AT-HSFB2A,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e037165_P002	AT-HSFA7A,...	transcription factor (HSF)	0.18	OrthoFinder output from all 47 species
Zm00001e041441_P001	AT-HSFB2A,...	transcription factor (HSF)	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0001671	ATPase activator activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	43	132

External Links

No external refs found!

LOC_Os10g28340.1 (AT-HSFA6B, HSFA6B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation