LOC_Os10g18099.1 (WRKY62, ATWRKY62,...)

Aliases : WRKY62, ATWRKY62, LOC_Os10g18099

Description : transcription factor (WRKY)

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g18099.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00050690	WRKY2, ATWRKY2,...	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
AT2G46130	WRKY43, ATWRKY43	WRKY DNA-binding protein 43	0.06	OrthoFinder output from all 47 species
AT2G47260	WRKY23, ATWRKY23	WRKY DNA-binding protein 23	0.02	OrthoFinder output from all 47 species
Adi_g039781	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054710	AtWRKY20, WRKY20	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117330	WRKY33, ATWRKY33	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g49141	WRKY75, ATWRKY75	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g33360	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05172	WRKY4	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g39081	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15984.t1	ATWRKY71,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene26528.t1	WRKY3, Aspi01Gene26528	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene48248.t2	WRKY6, ATWRKY6,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene49407.t1	ATWRKY71,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010734	WRKY42, AtWRKY42	WRKY-type transcription factor & original description: CDS=1-1518	0.05	OrthoFinder output from all 47 species
Azfi_s0245.g059987	AtWRKY20, WRKY20	WRKY-type transcription factor & original description: CDS=1-2319	0.02	OrthoFinder output from all 47 species
Azfi_s2368.g110994	No alias	WRKY-type transcription factor & original description: CDS=1-981	0.05	OrthoFinder output from all 47 species
Cba_g42568	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g61706	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g34916	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19081	WRKY55, ATWRKY55	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g20799	WRKY33, ATWRKY33	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os07g02060.1	ATWRKY57,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Len_g50898	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_164675g0010	WRKY42, AtWRKY42	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Msp_g19708	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g17722	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g13055	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25880	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g27505	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g18731	WRKY42, AtWRKY42	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g29855	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63321	WRKY42, AtWRKY42	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015874	WRKY28, ATWRKY28	WRKY-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g29317	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51056	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g010960.3.1	WRKY49,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Solyc09g014990.4.1	WRKY33,...	transcription factor (WRKY). transcription factor (WRKY33)	0.02	OrthoFinder output from all 47 species
Tin_g13422	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e020229_P002	ATWRKY71,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e027460_P001	WRKY56,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	64	124

External Links

No external refs found!

LOC_Os10g18099.1 (WRKY62, ATWRKY62,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation