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  5. LOC_Os09g26760.1

LOC_Os09g26760.1 (LOC_Os09g26760)


Aliases : LOC_Os09g26760

Description : DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana (sp|q38961|snm1_arath : 270.0)


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g26760.1
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00037420 evm_27.TU.AmTr_v1... DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre09.g399907 No alias DNA ligase 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g41765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02140 SNM1, ATSNM1 SNM interstrand crosslink repair factor 0.11 OrthoFinder output from all 47 species
MA_31065g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_611292g0010 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g24430.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e009882_P001 Zm00001e009882 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Zm00001e028943_P002 Zm00001e028943 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
InterPro domains Description Start Stop
IPR001660 SAM 490 549
IPR011084 DRMBL 847 951
No external refs found!