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  5. LOC_Os09g24250.1

LOC_Os09g24250.1 (LOC_Os09g24250)


Aliases : LOC_Os09g24250

Description : protein factor (USP39) of U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g24250.1

Target Alias Description ECC score Gene Family Method Actions
AT4G22285 No alias Ubiquitin C-terminal hydrolases superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g105601 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Aop_g09374 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0309.g064080 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Ceric.08G005200.1 Ceric.08G005200 component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Cre17.g721600 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g00812 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Gb_21040 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Ore_g16909 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Pir_g14987 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Solyc02g068480.3.1 Solyc02g068480 protein factor (USP39) of U4/U6 U5 small nuclear... 0.06 OrthoFinder output from all 47 species
Zm00001e013065_P004 Zm00001e013065 protein factor (USP39) of U4/U6 U5 small nuclear... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 126 187
IPR001394 Peptidase_C19_UCH 227 550
No external refs found!