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  5. LOC_Os09g21460.1

LOC_Os09g21460.1 (LOC_Os09g21460)


Aliases : LOC_Os09g21460

Description : component PRIN2 of plastid-encoded RNA polymerase


Gene families : OG0008326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g21460.1

Target Alias Description ECC score Gene Family Method Actions
AT1G10522 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.07 OrthoFinder output from all 47 species
Ala_g09148 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Als_g05250 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Aob_g09227 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011513 No alias not classified & original description: CDS=125-652 0.03 OrthoFinder output from all 47 species
Dcu_g24784 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Dde_g14880 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01020166001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
GSVIVT01020172001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Len_g02641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g05600.1 No alias component PRIN2 of plastid-encoded RNA polymerase 0.08 OrthoFinder output from all 47 species
Nbi_g38061 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Pir_g11027 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012000 No alias not classified & original description: CDS=272-829 0.02 OrthoFinder output from all 47 species
Sam_g35106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g006110.3.1 Solyc05g006110 component PRIN2 of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Zm00001e009772_P002 Zm00001e009772 component PRIN2 of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!