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  5. LOC_Os09g16458.1

LOC_Os09g16458.1 (ABCG40, PDR12,...)


Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, LOC_Os09g16458

Description : subfamily ABCG transporter


Gene families : OG0002595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g16458.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00258390 ATPDR7, PDR7,... Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00192070 PDR6, ATPDR6,... ABC transporter G family member 34 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aop_g36860 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38547 PDR6, ATPDR6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58126 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67685 ABCG40, PDR12,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37442 PEN3, ABCG36,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017186001 ABCG40, PDR12,... Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum 0.04 OrthoFinder output from all 47 species
Gb_33044 ABCG40, PDR12,... Pleiotropic drug resistance protein 1 OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g21350.1 PDR6, ATPDR6,... ABC transporter G family member 40 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
MA_10191470g0010 PIS1, ABCG37,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10282615g0010 PIS1, ABCG37,... ABC transporter G family member 37 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_10429218g0010 PDR6, ATPDR6 Pleiotropic drug resistance protein 1 OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
MA_468943g0010 PDR6, ATPDR6 Pleiotropic drug resistance protein 1 OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
MA_640809g0010 PDR6, ATPDR6 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g28498 PDR6, ATPDR6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01529 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61713 PDR6, ATPDR6 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 151 331
IPR029481 ABC_trans_N 77 125
No external refs found!