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  5. LOC_Os09g03600.1

LOC_Os09g03600.1 (LOC_Os09g03600)


Aliases : LOC_Os09g03600

Description : no hits & (original description: none)


Gene families : OG0004355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g03600.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00133890 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g086850 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Ala_g04025 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Aspi01Gene03847.t1 CRK8, Aspi01Gene03847 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000391.8 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g33198 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Gb_09722 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g16359 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.05 OrthoFinder output from all 47 species
MA_160950g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g23240.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g10539 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Nbi_g26310 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.04 OrthoFinder output from all 47 species
Ore_g08378 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.04 OrthoFinder output from all 47 species
Sam_g06697 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Solyc07g007890.3.1 Solyc07g007890 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Tin_g22557 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Zm00001e033607_P001 Zm00001e033607 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!