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  5. LOC_Os08g39430.1

LOC_Os08g39430.1 (LOC_Os08g39430)


Aliases : LOC_Os08g39430

Description : Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana (sp|p82658|tl19_arath : 216.0)


Gene families : OG0007904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g39430.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00242510 evm_27.TU.AmTr_v1... Thylakoid lumenal 19 kDa protein, chloroplastic... 0.11 OrthoFinder output from all 47 species
Adi_g039955 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g102973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g02953 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04818 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g08877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06066 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene17313.t1 Aspi01Gene17313 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G010600.1 Ceric.10G010600 not classified & original description: pacid=50613083... 0.12 OrthoFinder output from all 47 species
Cre03.g198850 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
Dac_g16656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07970 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Dde_g23796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18068 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_20026 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
Len_g31505 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g00701 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_132558g0010 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.15 OrthoFinder output from all 47 species
Mp2g02710.1 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.11 OrthoFinder output from all 47 species
Msp_g11612 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g11064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_11800V3.1 Pp3c4_11800 Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.04 OrthoFinder output from all 47 species
Ppi_g23945 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016709 No alias not classified & original description: CDS=1-780 0.04 OrthoFinder output from all 47 species
Solyc01g087040.2.1 Solyc01g087040 Thylakoid lumenal 19 kDa protein, chloroplastic... 0.1 OrthoFinder output from all 47 species
Spa_g11799 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Spa_g16540 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Tin_g00522 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e003510_P001 Zm00001e003510 Thylakoid lumenal 19 kDa protein, chloroplastic... 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 91 231
No external refs found!