LOC_Os08g38170.1 (LOC_Os08g38170)

Aliases : LOC_Os08g38170

Description : no hits & (original description: none)

Gene families : OG0001057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001057_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g38170.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00251960	evm_27.TU.AmTr_v1...	No description available	0.08	OrthoFinder output from all 47 species
AT1G13635	No alias	DNA glycosylase superfamily protein	0.11	OrthoFinder output from all 47 species
AT5G44680	No alias	DNA glycosylase superfamily protein	0.05	OrthoFinder output from all 47 species
AT5G57970	No alias	DNA glycosylase superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g008949	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g008950	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g025572	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06093	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17222	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g14470	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene47871.t1	Aspi01Gene47871	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g07359	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g07657	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.19G064900.1	Ceric.19G064900	not classified & original description: pacid=50575422...	0.02	OrthoFinder output from all 47 species
Dac_g07974	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07806	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010109001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01015953001	No alias	No description available	0.04	OrthoFinder output from all 47 species
LOC_Os01g58550.1	LOC_Os01g58550	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os09g25290.1	LOC_Os09g25290	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Len_g07998	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g36534	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g03976	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g08833	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g11422	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38328	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01344	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g31518	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g15736	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30259	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006322	No alias	not classified & original description: CDS=523-1905	0.02	OrthoFinder output from all 47 species
Solyc02g082120.3.1	Solyc02g082120	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Solyc04g079990.4.1	Solyc04g079990	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Solyc05g010800.3.1	Solyc05g010800	no hits & (original description: none)	0.15	OrthoFinder output from all 47 species
Solyc12g010050.2.1	Solyc12g010050	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g08423	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g01074	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g07631	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14899	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e003412_P001	Zm00001e003412	no hits & (original description: none)	0.18	OrthoFinder output from all 47 species
Zm00001e009836_P001	Zm00001e009836	no hits & (original description: none)	0.12	OrthoFinder output from all 47 species
Zm00001e019556_P001	Zm00001e019556	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e028917_P002	Zm00001e028917	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e034160_P002	Zm00001e034160	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003905	alkylbase DNA N-glycosylase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043733	DNA-3-methylbase glycosylase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005019	Adenine_glyco	147	320

External Links

No external refs found!

LOC_Os08g38170.1 (LOC_Os08g38170)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation