1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g34160.1

LOC_Os08g34160.1 (LOC_Os08g34160)


Aliases : LOC_Os08g34160

Description : Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana (sp|q8w4c3|parnl_arath : 266.0)


Gene families : OG0003974 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003974_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g34160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00208140 AHG2, ATPARN,... RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
AT1G55870 AHG2, ATPARN Polynucleotidyl transferase, ribonuclease H-like... 0.03 OrthoFinder output from all 47 species
Aev_g05407 AHG2, ATPARN not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16042 AHG2, ATPARN poly(A)-specific ribonuclease *(PARN) & original... 0.04 OrthoFinder output from all 47 species
Cba_g76457 AHG2, ATPARN poly(A)-specific ribonuclease *(PARN) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000658.12 No alias Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre02.g095071 AHG2, ATPARN No description available 0.02 OrthoFinder output from all 47 species
Dcu_g39737 AHG2, ATPARN not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014694001 AHG2, ATPARN RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Msp_g32260 AHG2, ATPARN not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26692 AHG2, ATPARN not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo410403 AHG2, ATPARN RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Spa_g29252 AHG2, ATPARN not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e022475_P001 Zm00001e022475 Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 16 497
No external refs found!