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  5. LOC_Os08g30770.1

LOC_Os08g30770.1 (ATATH6, ATH6, LOC_Os08g30770)


Aliases : ATATH6, ATH6, LOC_Os08g30770

Description : subfamily ABCA transporter


Gene families : OG0001879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g30770.1

Target Alias Description ECC score Gene Family Method Actions
AT3G47740 ATATH2, ATH2, ABCA3 ABC2 homolog 2 0.03 OrthoFinder output from all 47 species
AT3G47760 ATATH4, ABCA5, ATH4 ABC2 homolog 4 0.02 OrthoFinder output from all 47 species
AT3G47770 ATH5, ATATH5, ABCA6 ABC2 homolog 5 0.07 OrthoFinder output from all 47 species
AT3G47780 ATATH6, ATH6 ABC2 homolog 6 0.06 OrthoFinder output from all 47 species
AT3G47790 ATH7, ATATH7 ABC2 homolog 7 0.05 OrthoFinder output from all 47 species
Aop_g04431 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07523 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008040001 ATATH6, ATH6 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01029736001 ATH7, ATATH7 ABC transporter A family member 8 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os02g01820.1 ATH16, ATATH16,... subfamily ABCA transporter 0.03 OrthoFinder output from all 47 species
Mp7g18420.1 ATH7, ATATH7 subfamily ABCA transporter 0.04 OrthoFinder output from all 47 species
Nbi_g08039 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g10749 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16539 No alias subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e022343_P002 ATATH6, ATH6,... subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 657 801
No external refs found!