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  5. LOC_Os08g20570.1

LOC_Os08g20570.1 (LOC_Os08g20570)


Aliases : LOC_Os08g20570

Description : anion channel / anion:proton antiporter (CLC)


Gene families : OG0000501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g20570.1
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00233520 CLC-A, ATCLC-A,... Chloride channel protein CLC-a OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00013p00233550 ATCLC-B, CLC-B,... Solute transport.carrier-mediated transport.CLC anion... 0.03 OrthoFinder output from all 47 species
AT3G27170 ATCLC-B, CLC-B chloride channel B 0.05 OrthoFinder output from all 47 species
AT5G40890 CLC-A, ATCLC-A,... chloride channel A 0.1 OrthoFinder output from all 47 species
Adi_g005492 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.04 OrthoFinder output from all 47 species
Aev_g05149 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Aev_g41935 ATCLC-B, CLC-B anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Als_g29133 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Aob_g14150 CLC-D, ATCLC-D anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Ceric.03G016200.1 CLC-D, ATCLC-D,... anion channel / anion:proton antiporter *(CLC) &... 0.04 OrthoFinder output from all 47 species
Ceric.1Z011500.1 ATCLC-C, CLC-C,... anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01023156001 ATCLC-C, CLC-C Solute transport.carrier-mediated transport.CLC anion... 0.02 OrthoFinder output from all 47 species
GSVIVT01033108001 ATCLC-B, CLC-B Solute transport.carrier-mediated transport.CLC anion... 0.05 OrthoFinder output from all 47 species
Gb_17660 ATCLC-C, CLC-C anion channel / anion:proton antiporter (CLC) 0.03 OrthoFinder output from all 47 species
Lfl_g18115 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.04 OrthoFinder output from all 47 species
Lfl_g25565 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Nbi_g37480 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.04 OrthoFinder output from all 47 species
Ore_g04555 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.04 OrthoFinder output from all 47 species
Ore_g09753 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Pnu_g01742 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Pnu_g02131 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Smo100906 ATCLC-C, CLC-C Solute transport.carrier-mediated transport.CLC anion... 0.02 OrthoFinder output from all 47 species
Smo442632 ATCLC-C, CLC-C Solute transport.carrier-mediated transport.CLC anion... 0.03 OrthoFinder output from all 47 species
Solyc02g068080.3.1 ATCLC-B, CLC-B,... anion channel / anion:proton antiporter (CLC) 0.04 OrthoFinder output from all 47 species
Solyc07g007690.4.1 Solyc07g007690 anion channel / anion:proton antiporter (CLC) 0.06 OrthoFinder output from all 47 species
Zm00001e013966_P001 Zm00001e013966 anion channel / anion:proton antiporter (CLC) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005247 voltage-gated chloride channel activity IEA Interproscan
BP GO:0006821 chloride transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR000644 CBS_dom 705 753
IPR001807 Cl-channel_volt-gated 136 556
No external refs found!