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  5. LOC_Os08g02210.2

LOC_Os08g02210.2 (LOC_Os08g02210)


Aliases : LOC_Os08g02210

Description : Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana (sp|q7xa78|d27_arath : 161.0)


Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g02210.2
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.08 OrthoFinder output from all 47 species
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.11 OrthoFinder output from all 47 species
Adi_g033681 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02991 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g49501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06641 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g11103 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g00455 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g31538 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13955 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19690 No alias carotenoid isomerase *(DWARF27) & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene11607.t1 Aspi01Gene11607 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63556.t1 Aspi01Gene63556 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63557.t1 Aspi01Gene63557 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00750 No alias carotenoid isomerase *(DWARF27) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G115700.1 Ceric.02G115700 carotenoid isomerase *(DWARF27) & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.09G025400.1 Ceric.09G025400 not classified & original description: pacid=50588408... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.3 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.01 OrthoFinder output from all 47 species
Dac_g13831 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12391 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g31522 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03239 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g04481 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.06 OrthoFinder output from all 47 species
Gb_18729 No alias carotenoid isomerase (DWARF27) 0.07 OrthoFinder output from all 47 species
Len_g16141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25954 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11491 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g13325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_167711g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g16410.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g11577 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g26733 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g30675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19910 No alias carotenoid isomerase *(DWARF27) & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g05792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09207 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g24673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26521 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g62487 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021958 No alias not classified & original description: CDS=135-836 0.02 OrthoFinder output from all 47 species
Sam_g06073 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Smo99956 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc08g008630.4.1 Solyc08g008630 Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.09 OrthoFinder output from all 47 species
Spa_g05404 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g19073 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28773 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e029191_P001 Zm00001e029191 Beta-carotene isomerase D27, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025114 D27-like_C 151 233
No external refs found!