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  5. LOC_Os08g01660.1

LOC_Os08g01660.1 (HAP1, MEE63, MAGO,...)


Aliases : HAP1, MEE63, MAGO, LOC_Os08g01660

Description : component Magoh of RNA quality control Exon Junction complex


Gene families : OG0003958 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01660.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00130180 HAP1, MEE63,... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Adi_g026231 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g105543 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Als_g27005 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g08074 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene30613.t1 HAP1, MEE63,... component *(Magoh) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.21 HAP1, MEE63, MAGO RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Cre09.g392692 HAP1, MEE63, MAGO RNA processing.RNA quality control Exon Junction complex... 0.12 OrthoFinder output from all 47 species
Dcu_g07294 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Gb_38433 HAP1, MEE63, MAGO component Magoh of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
MA_10426266g0010 HAP1, MEE63, MAGO component Magoh of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Mp5g13520.1 HAP1, MEE63, MAGO component Magoh of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Nbi_g24780 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Pp3c2_21720V3.1 HAP1, MEE63,... mago nashi family protein 0.02 OrthoFinder output from all 47 species
Solyc03g093680.4.1 HAP1, MEE63,... component Magoh of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Tin_g08945 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Tin_g23631 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008380 RNA splicing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
InterPro domains Description Start Stop
IPR004023 Mago_nashi 15 164
No external refs found!