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  5. LOC_Os07g48880.3

LOC_Os07g48880.3 (IMPA-1, IMPA1,...)


Aliases : IMPA-1, IMPA1, AT-IMP, ATKAP ALPHA, AIMP ALPHA, LOC_Os07g48880

Description : importin alpha adaptor proteins


Gene families : OG0000665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g48880.3

Target Alias Description ECC score Gene Family Method Actions
Adi_g025667 IMPA-4 nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Adi_g056735 IMPA-3, MOS6, ATIMPALPHA3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100483 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Ala_g02305 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71049.t1 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71050.t1 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Cba_g07650 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Cba_g07658 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Ceric.02G072800.1 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Ceric.34G036300.1 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.04 OrthoFinder output from all 47 species
Dac_g04673 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Dcu_g09188 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.03 OrthoFinder output from all 47 species
Dde_g02882 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Pir_g01366 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.04 OrthoFinder output from all 47 species
Pir_g19340 IMPA-1, IMPA1,... nucleocytoplasmic transport cargo adaptor protein... 0.02 OrthoFinder output from all 47 species
Solyc06g009750.4.1 IMPA-1, IMPA1,... importin alpha adaptor proteins 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 280 318
IPR000225 Armadillo 164 192
IPR000225 Armadillo 196 234
IPR000225 Armadillo 71 109
IPR000225 Armadillo 322 360
IPR000225 Armadillo 33 69
IPR000225 Armadillo 114 151
IPR032413 Arm_3 376 425
No external refs found!