- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LOC_Os07g45074
Description : no hits & (original description: none)
Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00268p00010890 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00268p00016240 | evm_27.TU.AmTr_v1... | Protein modification.phosphorylation.atypical kinase... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s03799p00000720 | evm_27.TU.AmTr_v1... | No description available | 0.13 | OrthoFinder output from all 47 species | |
| AT2G17930 | No alias | Phosphatidylinositol 3- and 4-kinase family protein with... | 0.11 | OrthoFinder output from all 47 species | |
| AT4G36080 | No alias | phosphotransferases, alcohol group as... | 0.08 | OrthoFinder output from all 47 species | |
| Adi_g012013 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g05547 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11954 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g32646 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.07 | OrthoFinder output from all 47 species | |
| Aop_g10616 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene23771.t1 | Aspi01Gene23771 | component *(TRA1) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g06599 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.07G020000.1 | Ceric.07G020000 | component *(TRA1) of SAGA transcription co-activator... | 0.08 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021537.68 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03224 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g21159 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018783001 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.12 | OrthoFinder output from all 47 species | |
| Gb_02840 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_02842 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g45064.1 | LOC_Os07g45064 | component TRA1 of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g40192 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g36110 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10427352g0010 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.13 | OrthoFinder output from all 47 species | |
| MA_10427352g0020 | No alias | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| MA_10430300g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_158845g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_18290g0030 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.02 | OrthoFinder output from all 47 species | |
| MA_3337g0010 | No alias | protein kinase (PIKK) | 0.03 | OrthoFinder output from all 47 species | |
| Mp5g23620.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31775 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g03878 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g38151 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g39737 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0041.g012460 | No alias | GTPase effector *(RIC) & original description: CDS=210-11840 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g04527 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50512 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g083780.3.1 | Solyc02g083780 | protein kinase (PIKK) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g083900.3.1 | Solyc02g083900 | component TRA1 of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g25856 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g32158 | No alias | component *(TRA1) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e035713_P005 | Zm00001e035713 | component TRA1 of SAGA transcription co-activator... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0017069 | snRNA binding | IEP | HCCA |
| MF | GO:0017070 | U6 snRNA binding | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0030623 | U5 snRNA binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |